Molecular Strategies of Cadmium Detoxification in the Marine Diatom Phaeodactylum tricornutum: A Transcriptomic Perspective
Keywords:
Cadmium, Phaeodactylum Tricornutum, Transcriptomics, Oxidative Stress, Heavy Metal Detoxification, Bioindicator, Marine MicroalgaeAbstract
Cadmium (Cd) is a hazardous heavy metal increasingly contaminating marine ecosystems, posing risks to primary producers such as microalgae. This study investigates the physiological and transcriptomic responses of the marine diatom Phaeodactylum tricornutum to cadmium stress, with the goal of elucidating detoxification mechanisms and assessing its bioindicator potential. Cultures of P. tricornutum were exposed to 123 µg/L and 1230 µg/L Cd for 96 hours. Physiological assessments included growth rate, chlorophyll content, ROS levels, and cell viability. Concurrently, RNA-seq was performed to identify differentially expressed genes (DEGs) and enriched gene ontology (GO) terms associated with Cd stress. Results revealed that exposure to 1230 µg/L Cd caused substantial physiological impairments: decreased growth and chlorophyll content, elevated ROS accumulation, and reduced cell viability. Transcriptomic profiling showed marked upregulation of genes associated with metal efflux (ATPase5-1B), vacuolar sequestration (VIT1, CCC1), and oxidative stress mitigation (SOD, GSH1, HSP70). Enriched GO terms included “oxidative stress response” and “metal ion transport,” indicating activation of detoxification and stress adaptation pathways. The findings demonstrate that P. tricornutum employs a coordinated molecular defense strategy involving metal transport and antioxidant pathways, conferring resilience under high cadmium exposure. These adaptive responses support its use as a sensitive bioindicator species for marine cadmium pollution. This integrative approach enhances understanding of diatom detoxification strategies and offers practical applications in ecotoxicological monitoring.
References
Ashworth, J. R., Turkarslan, S., Harris, M. M., Orellana, M. V, & Baliga, N. S. (2016). Pan-Transcriptomic Analysis Identifies Coordinated and Orthologous Functional Modules in the Diatoms Thalassiosira Pseudonana and Phaeodactylum Tricornutum. Marine Genomics, 26, 21–28. https://doi.org/10.1016/j.margen.2015.10.011
Bourne, H. L., Bishop, J. K. B., Lam, P. J., & Ohnemus, D. C. (2018). Global Spatial and Temporal Variation of Cd:P in Euphotic Zone Particulates. Global Biogeochemical Cycles, 32(7), 1123–1141. https://doi.org/10.1029/2017gb005842
Carvalho, H. C. d, & Bowler, C. (2020). Global Identification of a Marine Diatom Long Noncoding Natural Antisense Transcripts (NATs) and Their Response to Phosphate Fluctuations. Scientific Reports, 10(1). https://doi.org/10.1038/s41598-020-71002-0
Chujan, S., Kitkumthorn, N., & Satayavivad, J. (2023). Identification of Potential Molecular Mechanisms and Prognostic Markers for Oral Squamous Cell Carcinoma: A Bioinformatics Analysis. Journal of International Society of Preventive and Community Dentistry, 13(3), 237–246. https://doi.org/10.4103/jispcd.jispcd_15_23
Coakley, S., Cahill, G., Enright, A., O’Rourke, B. E., & Petti, C. (2021). Enzymatic Response to Cadmium by Impatiens Glandulifera: A Preliminary Investigation. Biochemistry and Biophysics Reports, 26, 100936. https://doi.org/10.1016/j.bbrep.2021.100936
Dai, J., Wang, N., Xiong, H., Qiu, W., Nakanishi, H., Kobayashi, T., Nishizawa, N. K., & Zuo, Y. (2018). The Yellow Stripe-Like (YSL. Gene Functions in Internal Copper Transport in Peanut. Genes, 9(12), 635. https://doi.org/10.3390/genes9120635
Díaz˗Cruz, M. S., Francisco, P. d, Olsson, S., Aguilera, Á., González‐Toril, E., & Martín‐González, A. (2020). Toxicity, Physiological, and Ultrastructural Effects of Arsenic and Cadmium on the Extremophilic Microalga Chlamydomonas Acidophila. International Journal of Environmental Research and Public Health, 17(5). https://doi.org/10.3390/ijerph17051650
Hollister, A. P., Kerr, M., Malki, K., Muhlbach, E., Robert, M., Tilney, C. L., Breitbart, M., Hubbard, K. A., & Buck, K. N. (2020). Regeneration of Macronutrients and Trace Metals During Phytoplankton Decay: An Experimental Study. Limnology and Oceanography, 65(8), 1936–1960. https://doi.org/10.1002/lno.11429
Huang, S., Liu, Z., Li, D., Yao, R., Hou, L., Li, X., & Feng, H. (2016). Physiological Characterization and Comparative Transcriptome Analysis of a Slow-Growing Reduced-Thylakoid Mutant of Chinese Cabbage (Brassica Campestris Ssp. Pekinensis. Frontiers in Plant Science, 7. https://doi.org/10.3389/fpls.2016.00003
Islam, S., Sabharwal, T., Wu, S., Bullock, T. J., & Mehdy, M. C. (2020). Early Dynamics of Photosynthetic Lhcf2 and Lhcf15 Transcription and mRNA Stabilities in Response to Herbivory-Related Decadienal in Phaeodactylum Tricornutum. Scientific Reports, 10(1). https://doi.org/10.1038/s41598-020-58885-9
Kumar, S., & Sharma, A. (2019). Cadmium Toxicity: Effects on Human Reproduction and Fertility. Reviews on Environmental Health, 34(4), 327–338. https://doi.org/10.1515/reveh-2019-0016
Lavoie, M., Raven, J. A., Jones, O. A., & Qian, H. (2016). Energy Cost of Intracellular Metal and Metalloid Detoxification in Wild-Type Eukaryotic Phytoplankton. Metallomics, 8(10), 1097–1109. https://doi.org/10.1039/c6mt00049e
Li, F., Beardall, J., Collins, S., & Gao, K. (2016). Decreased Photosynthesis and Growth With Reduced Respiration in the Model Diatom Phaeodactylum Tricornutum Grown Under Elevated CO2 Over 1800 Generations. Global Change Biology, 23(1), 127–137. https://doi.org/10.1111/gcb.13501
Ma, T., Huo, Z., Kuo, A., Zhu, L., Fang, Z., Zeng, X., Lin, C., Liu, S., Wang, L., Liu, P., Rahman, T., Chang, L., Kim, S., Li, J., Park, Y., Song, C., Oesterreich, S., Sibille, E., & Tseng, G. C. (2018). MetaOmics: Analysis Pipeline and Browser-Based Software Suite for Transcriptomic Meta-Analysis. Bioinformatics, 35(9), 1597–1599. https://doi.org/10.1093/bioinformatics/bty825
Ohta, H., Qi, Y., Ohba, K., Toyooka, T., & Wang, R. (2019). Role of Metallothionein-Like Cadmium-Binding Protein (MTLCdBP) in the Protective Mechanism Against Cadmium Toxicity in the Testis. Industrial Health, 57(5), 570–579. https://doi.org/10.2486/indhealth.2018-0177
Penen, F., Isaure, M., Dobritzsch, D., Castillo‐Michel, H., Gontier, E., Coustumer, P. L., Malherbe, J., & Schaumlöffel, D. (2019). Pyrenoidal Sequestration of Cadmium Impairs Carbon Dioxide Fixation in a Microalga. Plant Cell & Environment, 43(2), 479–495. https://doi.org/10.1111/pce.13674
Pikula, K., Johari, S. A., Santos‐Oliveira, R., & Golokhvast, K. S. (2022). Individual and Binary Mixture Toxicity of Five Nanoparticles in Marine Microalga Heterosigma Akashiwo. International Journal of Molecular Sciences, 23(2), 990. https://doi.org/10.3390/ijms23020990
Sozoniuk, M., Nowak, M., Dudziak, K., Bulak, P., Leśniowska-Nowak, J., & Kowalczyk, K. (2019). Antioxidative System Response of Pedunculate Oak (Quercus Robur L.) Seedlings to Cd Exposure. Physiology and Molecular Biology of Plants, 25(6), 1377–1384. https://doi.org/10.1007/s12298-019-00712-1
Srivastava, N., Spielman, S. J., Morrison, S. M., & Moore, E. K. (2021). Geological Factors Impacted Cadmium Availability and Use as an Alternative Cofactor for Zinc in the Carbon Fixation Pathways of Marine Diatoms. Journal of Geophysical Research Biogeosciences, 126(2). https://doi.org/10.1029/2020jg005966
Sung, M., He, J., Zhou, Q., Chen, Y., Ji, J. S., Chen, H., & Li, Z. (2022). Using an Integrated Framework to Investigate the Facilitators and Barriers of Health Information Technology Implementation in Noncommunicable Disease Management. Systematic Review. Journal of Medical Internet Research, 24(7). https://doi.org/10.2196/37338
Tiwari, M., Krishnamurthy, S., Shukla, D., Kiiskila, J. D., Jain, A., Datta, R., Sharma, N. C., & Sahi, S. V. (2016). Comparative Transcriptome and Proteome Analysis to Reveal the Biosynthesis of Gold Nanoparticles in Arabidopsis. Scientific Reports, 6(1). https://doi.org/10.1038/srep21733
Xu, L., Zhang, F., Tang, M., Wang, Y., Dong, J., Ying, J., Chen, Y., Hu, B., Li, C., & Liu, L. (2020). Melatonin Confers Cadmium Tolerance by Modulating Critical Heavy Metal Chelators and Transporters in Radish Plants. Journal of Pineal Research, 69(1). https://doi.org/10.1111/jpi.12659
Yazdanabdad, T. E., Forghaniha, A., Emtyazjoo, M., & Ramezani, M. (2021). Effects of Iron-Oxide Nanoparticles (Fe3O4) Released From Synthesized Iron-Based Thiourea Catalyst on the Growth, Cell Density, and Pigment Content of Chlorella Vulgaris. https://doi.org/10.21203/rs.3.rs-1013835/v1
Ye, T., Hao, Y.-H., Yu, L., Shi, H., Reiter, R. J., & Feng, Y. (2017). A Simple, Rapid Method for Determination of Melatonin in Plant Tissues by UPLC Coupled With High Resolution Orbitrap Mass Spectrometry. Frontiers in Plant Science, 8. https://doi.org/10.3389/fpls.2017.00064
Zhao, J., Zhong, Z.-Z., Zhao, L., & Li, W. (2025). Key Pathways and Genes in Hepatitis B Virus-Related Liver Inflammation: Expression Profiling and Bioinformatics Analysis. Medicine, 101(34), 30229. https://doi.org/10.1097/md.0000000000030229.

